PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0899s0011.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family E2F/DP
Protein Properties Length: 421aa    MW: 46188.1 Da    PI: 5.2677
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0899s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.81.6e-27130195171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++++++giv+ln++a+ L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  Kalax.0899s0011.1.p 130 RYDSSLGLLTKKFISLIKQAKDGIVDLNKAADML---EV--QKRRIYDITNVLEGIGLIEKMLKNQIRWKG 195
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-28127196IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.4E-17130193IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-34130195IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.5E-24132195IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440742.62E-12211290No hitNo description
PfamPF164213.8E-12213288IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MLESAPSSQR PNRQQILSSA KPPSGDSYYT FSSVSCKSRR LADRGEDGVV VRSLLYREKD  60
TKESEAQISQ VAVGGSLKTS RSSASMLKSG KGDKASKTRV VKSGGPGPRT PASDVGLPLV  120
NNLSAANSCR YDSSLGLLTK KFISLIKQAK DGIVDLNKAA DMLEVQKRRI YDITNVLEGI  180
GLIEKMLKNQ IRWKGIDVSK PGVCNESVGS IQRNARKLTD LFEDENKKKW LFLRDEEIMT  240
LPCFQVCLKA PHGATVEVPD PDEDGDHSEK RYRILFRSIM GPIDVYLVSQ FEEKVEEVYG  300
NGETSSIQTA SKIDTPPRNT IADERIPDDQ QIYSDLNTLP DVGGIKKIVP SEVDNDADYW  360
LLSEADVSIT DMWSTEDCPG LNGSGFDTWR PDLASSEQPL PPTGTTPKAK RALFASNSDM  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-24130196774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012477175.11e-124PREDICTED: transcription factor E2FB-like
SwissprotQ9FV711e-102E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A0D2LXW81e-124A0A0D2LXW8_G
TrEMBLA0A0D2PXX11e-124A0A0D2PXX1_G
STRINGVIT_06s0080g01110.t011e-119(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-104E2F transcription factor 1